Memory and learning - using mouse to model neurobiological and behavioural aspects of Down syndrome and assess pharmacotherapeutics

Mouse models are a standard tool in the study of many human diseases, providing insights into the normal functions of a gene, how these are altered in disease and how they contribute to a disease process, as well as information on drug action, efficacy and side effects. Our knowledge of human genes, their genetics, functions, interactions and biochemistry, has dramatically improved over the last few years. Recently, several different drugs have been shown to rescue learning and memory deficits in a major mouse model of Down syndrome. Here, we first review the challenges inherent in using mouse models in Down syndrome research and then describe the successful molecular/genetic interventions that are cause for cautious optimism. We then predict critical molecular abnormalities that can be tested for relevance to learning and memory and that are potential targets of existing pharmacotherapeutics.

Down Syndrome Research and Practice


Mouse models are a standard tool in the study of many human diseases, in basic research and in preclinical assessment of potential therapeutics. Their use, in molecular, cellular and behavioural experiments, can provide insight into the normal functions of a gene, how these are altered in disease and how they contribute to a disease process, as well as information on drug action, efficacy and side effects. Down syndrome has long been regarded by many in both basic and clinical research as too complex a challenge for effective pharmacological intervention. This attitude, however, should change now that several different drugs have been shown to rescue learning and memory deficits in a major mouse model of Down syndrome. The challenges in Down syndrome have not become simpler, rather our knowledge of human genes, their genetics, functions, interactions and biochemistry, has dramatically improved over the last few years. Here, we first review the challenges inherent in using mouse models in Down syndrome research and then describe the successful molecular/genetic interventions that are cause for cautious optimism. Lastly, we predict critical molecular abnormalities that can be tested for relevance to learning and memory and that are potential targets of existing pharmacotherapeutics.

Challenges in modelling Down syndrome in mouse

i) Gene numbers and distribution

Human chromosome 21 encodes over 500 genes [1] . Current knowledge of the functions of these genes is quite limited; we understand something about the function of only one third and nothing at all about the remaining two thirds [2,3] . Because we have no basis for eliminating any genes as candidates for making some contribution to the features of Down syndrome, we are left with a large and complex set of genes to be considered. The basic molecular hypothesis in Down syndrome is that the extra copy of chromosome 21 will result in a 50% increase in the levels of RNA produced from each gene present in three copies. Experiments, with human derived samples and mouse models, have largely verified the prediction of increased RNA [4-8] . Again, data are limited, and they do not allow any significant reduction in the number of genes that need to be considered in a thorough and comprehensive analysis.

ii) Mice are not little people in fur coats

Modelling any human disease in animals is always accompanied by limitations and cautions. Because of the number of genes involved, Down syndrome presents unique as well as common difficulties.

First, when we look at the locations of the best studied of human chromosome 21 genes, we find that they are located on three different mouse chromosomes. Of a set of 170 genes, 112 are on located on mouse chromosome 16, 19 on mouse chromosome 17 and 39 on mouse chromosome 10 (see Figure 1). Thus, creating a mouse that contains three copies of all genes corresponding to those on chromosome 21 is not trivial. In fact, it has not been accomplished, and technical, and possibly biological, difficulties may make it impossible. Given that the largest number of genes map to mouse chromosome 16, these genes have been the focus of model construction. Figure 1 illustrates the current models and the proportion of the 112 genes they contain. The most thoroughly studied of these is the Ts65Dn, because it has been available the longest [9] .

Figure 1 | Major mouse models of Down syndrome. Reviewed in Seregaza [10] . See also refs 11,12,13.

Second, when the genomic DNA of mouse is analysed in detail for gene content, we find significant differences from human chromosome 21. While approximately 540 genes have been identified on human chromosome 21, in the corresponding regions of mouse DNA, only 430 were identified [1] . Furthermore, only 200 human genes are sufficiently similar to mouse to be confident that they have the same functions. Thus, based on current knowledge and with cautious interpretations, we must assume that approximately 300 chromosome 21 genes may have human-specific functions and approximately 200 genes may have mouse-specific functions. The take home message is that, even if we produce a mouse that carries three copies of the appropriate segments of chromosomes16, 17 and 10, it will lack some human genes and carry other mouse genes. While this is a nuisance, it is logically not surprising; it is reasonable to expect the differences between human and mouse are a result of differences at the DNA level.

iii) Assessing learning and memory in mice

Much of human cognitive evaluation relies on language. While this is an obvious limitation in the use of mouse models, there are other correlates of learning and memory that have parallels in rodents and that can be used for evaluation of Down syndrome-relevant deficits and drug efficacies. Most commonly in Down syndrome research these have involved tests of hippocampal-based learning, in particular tests of spatial learning and memory, such as the Morris Water Maze, Contextual Fear Conditioning and Novel Object Recognition. These are important tests because the best assessments of Down syndrome deficits implicate deficits in hippocampal function [14,15] . Notably, the Ts65Dn mice display deficits in each of these tasks [10, 16] .

We also need tests with sensitivity and resolution to discriminate levels of impairment among genetically different mouse models and tests that assay impairment of other specific brain regions that correlate with Down syndrome deficits. We also require uniform application of behavioural testing: reliable comparisons among laboratories of the deficits in different mouse models and of results of therapeutic testing require the use of the same testing protocols. Such criteria have yet to be established within the research community.

Thus, the challenges to use of mouse models in Down syndrome research are the large number of genes on human chromosome 21, the differences in gene content and distribution within mouse chromosomes, and the valid representation and interpretation of complex Down syndrome-relevant learning and memory features in mouse.

Success, and cautions, in rescuing behavioural/neurobiological abnormalities in mouse models

Table 1 lists recent success stories with reversing Down syndrome-like features in Ts65Dn mice. Treatments include three pharmacological reagents: memantine, pentylenetetrazole (PTZ) and fluoxetine (Prozac); two biological reagents: nerve growth factor (NGF) and Sonic Hedgehog (Shh); and one genetic manipulation using the chromosome 21gene APP. The results with memantine and PTZ are particularly exciting because they demonstrate the rescue of learning/memory deficits as measured by three tests of hippocampal function, the Morris Water Maze, Contextual Fear Conditioning and Novel Object Recognition. Other interventions reversed abnormalities seen at the cellular level, e.g. numbers of cells (fluoxetine, Shh) or premature loss of function (NGF, APP), and their effects on learning and memory have yet to be assayed. Table 1 also lists some advantages of each treatment and some significant limitations of the current knowledge.

Treatment Target Phenotypic feature Outcome Reference Advantages Limitations
Memantine NMDAR Hippocampal-based learning deficit (CFC) Rescue of CFC deficit Costa et al. [17] Approved for use in AD Not tested in children
Pentylenetetrazole (PTZ) GABRA Hippocampal-based learning deficits (NOR; MWM) Rescue of NOR, MWM deficits Fernandez et al. [16] ; Rueda et al. [18] Effects lasted 3 months after last drug exposure Not approved for human use; can induce seizures
Fluoxetine (Prozac) Serotonin Impaired neurogenesis
Improved neurogenesis Clark et al. [19] Approved for human use (mood disorders) Not tested in children; effects on learning/memory not tested
Nerve growth factor (NGF) TrkA, p75 Neurodegeneration Rescue of cellular abnormality Cooper et al. [20] - Effects on learning/memory not tested; no drug available
Activator of sonic hedgehog (SHH) SHH Cellular abnormalities in the cerebellum Rescue of cellular abnormality Roper et al. [21] - Effects on learning/memory not tested; increased cancer risk
Genetic reduction of APP (chr21 gene) APP (chr21) Failed NGF transport, neurodegeneration) Partial rescue of cellular abnormality Cataldo et al. [22] ; Salehi et al. [23] - Effects on learning/memory not tested; no drug available
Tests of hippocampal-based learning: CFC: Contextual Fear Conditioning; NOR, Novel Object Recognition; MWM, Morris Water Maze. AD, Alzheimer's Disease

Table 1 | Successful interventions using Ts65Dn mice: pharmacological, biochemical and genetic

A critical point to note in Table 1 is that, with the exception of the APP gene, none of the targets of intervention is a chromosome 21 gene. Instead, different types of information led to the choices of interventions. Memantine and fluoxetine were chosen based on their effects directly on chromosome 21 proteins or indirectly on targets of chromosome 21 proteins. As shown in Figure 2, multiple chromosome 21 proteins, including APP, directly and indirectly impact the activity of the non-chromosome 21 protein complexes, calcineurin (CaN) and the NMDA receptor, NMDAR. Both CaN and NMDAR play critical roles in normal neurological function, including learning and memory. NMDAR is predicted to be over active in Down syndrome due to the combined effects of inhibition of CaN and direct effects of additional chromosome 21 proteins. Memantine antagonises the hyperactivity of NMDAR and thus was predicted, correctly, to reverse effects of at least some chromosome 21 proteins [17] .

Use of fluoxetine (Prozac), which targets the serotonin system, is also based on a mechanistically sound prediction connected to chromosome 21 proteins. Neurogenesis, production of new brain cells from neural precursors, is a normal ongoing process in the adult hippocampus, and is believed to be required for normal hippocampal function. It has been shown to be impaired in the Down syndrome mouse model Ts65Dn [19, 24] . The implication is that impaired neurogenesis will result in impaired hippocampal function. Overexpression of the chromosome 21protein GIRK2 is predicted to impact the serotonin receptor as shown in Figure 3 and as a result to impair neurogenesis. Figure 3 shows that perturbation of the serotonin pathway in Down syndrome is complicated by interactions with additional chromosome 21 proteins.

The remaining treatments, PTZ, NGF and Shh, lack demonstrated connections to chromosome 21 proteins and were chosen instead because of their predicted effects on cellular/functional abnormalities observed in the Ts65Dn mice. However, PTZ effects on GABRA may be mediated through CaN [28] and therefore also have an indirect association with multiple chromosome 21 proteins as shown in Figure 2.

Figure 2 | Chromosome 21genes directly and indirectly impact calcineurin (CaN) and the NMDA receptor (NMDAR). Chromosome 21genes are shown shaded. Large arrows indicate targets of known pharmacological reagents.

The results in Table 1 emphasise several important issues. First and most positively, non-chromosome 21 proteins can be successful, and may be preferable, targets for therapeutics when they can 'integrate' the effects of multiple chromosome 21 proteins. This is clearly illustrated in Figures 2 and 3. The reason for optimism here lies in the possibility that one or a small number of therapeutics may be combined to ameliorate the effects of many critical chromosome 21 proteins, thus making the multi-gene problem more tractable. Second, while our knowledge of the functions of chromosome 21 genes is incomplete, we can still form testable hypotheses regarding potential therapeutics and examine their efficacy in mouse. Third, there are specific very positive features of some of the interventions in Table 1. Memantine and fluoxetine are already approved for human use (in Alzheimer's Disease and depression, respectively); such approval greatly facilitates clinical trials and review processes when and if extension of their use to Down syndrome is considered. It is also encouraging that the effects of PTZ lasted for at least three months following the last drug treatment.

Figure 3 | Pathways relevant to adult neurogenesis: predicting perturbations in Down syndrome and effects of fluoxetine. Signalling through 5HT1AR is required for neurogenesis; VEGF and BDNF are required for proliferation of neural precursors and survival of newborn neurons, respectively. Serotonin (5HT) levels are decreased in Down syndrome, possibly due to GIRK2 activation by 5HT1A autoreceptors causing hyperpolarisation of the presynaptic membrane and inhibition of 5HT release. Fluoxetine (FLX) blocks reuptake of 5HT and thus increases 5HT concentrations and resultant signaling through the integrated pathways that involve cAMP, Ras/Erk and PI3K/Akt, and that converge on CREB. Several chromosome 21 proteins (shaded) interact with pathway components and are predicted to affect pathway flux when overexpressed. Fluoxetine also alters functional properties of 5HT2CR (*) which may also be affected by increased ADAR2(*). Solid arrows, activation; dashed arrows, indirect activation; blunt lines, inhibition; dotted lines, alters functional properties. (Figure is a composite from Warner-Schmidt and Duman, Banasr et al. and Gardiner et al. [25,26,27] ). With the exception of ADAR2, all chromosome 21 proteins are trisomic in the Ts65Dn mouse.

It is important, however, to keep in mind that the data in Table 1 represent the results of basic research, and while they are encouraging for their potential for application in Down syndrome, they are not clinical data. Each intervention has significant limitations that require resolution before clinical application in Down syndrome is considered. Applicable to all entries in Table 1 are the following: none has been approved for use in children, the consequences of long term use are not known (i.e. side effects, loss of efficacy), the extent of learning/memory benefits are not known (i.e. how many and which types of deficits can be rescued), and, above all, because the Ts65Dn is not a perfect model for Down syndrome, the effects on drug responses of the additional genes that are trisomic in Down syndrome are not known and could be both significant and negative.

Prediction of critical genes and potential therapeutic targets

Recent advances in genetics and biochemistry have made it increasingly clear that chromosome 21 proteins do not function independently. As shown in Figures 2 and 3, many have been shown to impact the same or overlapping biochemical pathways and cellular processes or share the same targets, and may act synergistically or antagonistically. There are a number of additional drugs/small molecules that could be used immediately in similar studies with 'knowledge-based' targets: TIAM1/Rac, Dyrk1a, MAPK, calcineurin, NMDAR, GABRA, neurogenesis (Figure 2, large arrows). These could be tested relatively quickly in learning/memory tasks in the Ts65Dn, and results would strengthen or refute the molecular basis of results in Table 1 and predictions in Figures 2 and 3. Verification of the learning/memory outcomes of several target-drug combinations would provide needed confidence for the potential benefits of preclinical assessments and initial clinical trials.

If a goal of Down syndrome research is knowledge-based identification of targets and potential pharmacotherapeutics, an aggressive programme should include a broad ranging survey for candidate chr21 genes and their connections to non-chromosome 21 genes with known functions in learning and memory processes. In Table 2, we list a number of Down syndrome features, seen with variable frequency and severity in the Down syndrome population, that directly or indirectly impact learning and memory, and also list candidate genes. Genes were chosen because, in each case, mutations have been identified that directly cause the specific feature. In Down syndrome, of course, we do not look for mutations, but the rationale is as follows: if a gene-specific mutation results, for example, in deafness, that gene must function in a pathway relevant to some aspect of the hearing process or development. Therefore it is conceivable that overexpression, as in Down syndrome, of some or all variants of the same gene may perturb the same pathway with deleterious consequences for hearing.

Feature Frequency in Down syndrome hromosome 21 gene associations Non-chromosome 21 gene associations
Cognitive deficits Normal distribution; mean IQ = 45;
range, 25-70
NMDAR, MAPK, calcineurin, Ras, Elk, BDNF, GABRA; + 300 gene mutations associated with cognitive deficits
Memantine response Unknown* RCAN1, ITSN1, SYNJ1, DYRK1A, TIAM1, PCP4, BACH1, SOD1, APP NR1, NR2a,b, calcineurin, calmodulin, GSK3B, Akt, Erk1/2
Autism 7% CXADR-BTG3-NCAM2 region NLGN3, NLGN4X; GABRA4; NRXN1(?)
Seizures 7% *CSTB, GRIK1 (JAE), GIRK2, HLCS, +401 gene mutations associated with seizures
Hearing impairment 15% CLDN14 (DFNB29), *TMPRSS3 (DNFB8,10), KCNE1 (JLNS1) +277 gene mutations associated with deafness
Vision impairment 40% *CRYAA, *CBS,* LSS +155 gene mutations associated with vision impairment
Alzheimer's pathology All APP, BACE2 APPL1, APPL2, BACE1, PS1, PS2, APOE, MAPT
AD-like dementia 50% at age 50 APP, BACE2 APPL1, APPL2, BACE1, PS1, PS2, APOE, MAPT
Anxiety ? *SUMO3, *NRIP1; MRAP GR, BDNF; MC2R
Early menopause ? *SUMO3, *NRIP1 ER
Inflammation ? IFNAR1,2, IL10RB, IFNGR2,* S100B IL1
Down syndrome features and frequency [29-33]. Chromosome 21 and non-chromosome 21: Online Mendelian Inheritance in Man ( *, genes that are not present in the Ts65Dn model and thus their study requires development of new mouse models.

Table 2 | Down syndrome features and variable frequency and candidate gene associations

We include non-chromosome 21 genes for a similar rationale: one or more specific variants of these genes, in the context of trisomy 21, may perturb normal functioning of the same pathways.

Forty chromosome 21 genes are included in Table 2. Not all of these can be studied in mice using the Ts65Dn and therefore additional mouse models need to be constructed. Table 2 also includes hundreds of non-chromosome 21 genes and it is likely that additional genes also contribute. While this seems a daunting number, there are large scale molecular approaches, such as microarray based procedures, that are now well established for handling >20,000 genes and even entire genome surveys. There is also the more novel but increasingly robust technique of high throughput DNA sequencing.

Large scale experiments may best be done with human DNA and this will require samples from individuals with Down syndrome. To be effective, this means the establishment of a bank of Down syndrome-derived DNAs, preferably as immortalised cell lines obtained from blood samples, plus the linking of each sample to a consistently detailed description of the individual's cognitive strengths and weaknesses. DNA banks, whole genome surveys and construction of new mouse models require a multi-year commitment of resources, including funding, and a realistic view of the time frame for translating successful basic research findings to clinical treatments.


Preventing or ameliorating the cognitive deficits in Down syndrome remains a challenge. However, recent successes with mouse models, increasing information on the functions and interactions of chromosome 21 genes, and increasingly sophisticated and high throughput technologies for assays of gene function suggest that an aggressive programme to identify and test potential pharmacotherapeutics can be productive. While use of mouse has practical advantages, it is important to be realistic about the limitations: there are significant and poorly understood differences in gene makeup and biochemistry between human and mouse that may affect the efficacy of any treatment; the costs of an appropriately aggressive research programme are significant, and the time and costs of clinical trials are considerably more so, especially when approval is sought for a new drug. However, while outcomes are not guaranteed, the potential is high for significant benefit to individuals with Down syndrome, and their families and communities. This potential should be explored.


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Katheleen Gardiner is at the Department of Pediatrics, Human Medical Genetics Program, University of Colorado, Denver, 12800 E. 19th Avenue, Aurora, Colorado 80045, USA.

Correspondence to Katheleen Gardiner • e-mail:

Paper prepared from presentations and discussions at the Down Syndrome Research Directions Symposium 2007, Portsmouth, UK. The symposium was hosted by Down Syndrome Education International in association with the Anna and John J Sie Foundation, Denver. Major sponsors also included the Down Syndrome Foundation of Orange County, California and the National Down Syndrome Society of the USA. Information about the symposium can be found at /


Received: 2 August 2008; Accepted: 9 August 2008; Published online: 24 October 2008